HL_3CF5_033

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

3CF5|1|X|G|1338, 3CF5|1|X|U|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_033 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.1003

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

3CF5|1|X|G|1337
3CF5|1|X|G|1338
3CF5|1|X|U|1339
3CF5|1|X|C|1340
3CF5|1|X|G|1341
3CF5|1|X|U|1342
3CF5|1|X|C|1343

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain K

50S RIBOSOMAL PROTEIN L17

Chain P

50S RIBOSOMAL PROTEIN L22