HL_3CF5_045

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

3CF5|1|X|A|1771, 3CF5|1|X|C|1772, 3CF5|1|X|C|1773, 3CF5|1|X|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_045 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.1309

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

3CF5|1|X|G|1767
3CF5|1|X|U|1768
3CF5|1|X|U|1769
3CF5|1|X|U|1770
3CF5|1|X|A|1771
3CF5|1|X|C|1772
3CF5|1|X|C|1773
3CF5|1|X|A|1774
3CF5|1|X|A|1775
3CF5|1|X|A|1776
3CF5|1|X|A|1777
3CF5|1|X|U|1778
3CF5|1|X|C|1779

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain A

50S RIBOSOMAL PROTEIN L2