HL_3CF5_053

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

3CF5|1|X|A|2247, 3CF5|1|X|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_053 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1109

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

3CF5|1|X|C|2243
3CF5|1|X|C|2244
3CF5|1|X|A|2245
3CF5|1|X|A|2246
3CF5|1|X|A|2247
3CF5|1|X|A|2248
3CF5|1|X|U|2249
3CF5|1|X|G|2250
3CF5|1|X|U|2251
3CF5|1|X|A|2252
3CF5|1|X|A|2253
3CF5|1|X|C|2254
3CF5|1|X|G|2255

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L16

Chain T

50S RIBOSOMAL PROTEIN L27