HL_3CF5_058

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

3CF5|1|X|U|2385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_058 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1534

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

3CF5|1|X|C|2383
3CF5|1|X|G|2384
3CF5|1|X|U|2385
3CF5|1|X|G|2386
3CF5|1|X|U|2387
3CF5|1|X|G|2388
3CF5|1|X|G|2389
3CF5|1|X|A|2390
3CF5|1|X|A|2391
3CF5|1|X|G|2392

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L15

Chain U

50S RIBOSOMAL PROTEIN L28