HL_3CMA_055

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

3CMA|1|0|G|2283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CMA_055 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.0741

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3CMA|1|0|C|2281
3CMA|1|0|U|2282
3CMA|1|0|G|2283
3CMA|1|0|G|2284
3CMA|1|0|G|2285
3CMA|1|0|G|2286
3CMA|1|0|C|2287
3CMA|1|0|G|2288
3CMA|1|0|G|2289

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 6

RNA (5'-R(*CP*CP*(8AN))-3')

Chain H

50S ribosomal protein L10e