HL_3CMA_071

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

3CMA|1|9|C|40

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CMA_071 not in the Motif Atlas

Geometric match to HL_4V9F_071

Geometric discrepancy: 0.1072

The information below is about HL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

3CMA|1|9|C|37
3CMA|1|9|A|38
3CMA|1|9|U|39
3CMA|1|9|C|40
3CMA|1|9|C|41
3CMA|1|9|C|42
3CMA|1|9|G|43

Current chains

Chain 9

5S RIBOSOMAL RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain D

50S ribosomal protein L5P

Chain N

50S ribosomal protein L18P