HL_3CME_019

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAGUAUC

Length

7 nucleotides

Bulged bases

3CME|1|0|G|672, 3CME|1|0|A|674

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CME_019 not in the Motif Atlas

Homologous match to HL_4V9F_019

Geometric discrepancy: 0.0724

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

3CME|1|0|G|670
3CME|1|0|A|671
3CME|1|0|G|672
3CME|1|0|U|673
3CME|1|0|A|674
3CME|1|0|U|675
3CME|1|0|C|676

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L4P