HL_3CME_030

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

3CME|1|0|A|1174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CME_030 not in the Motif Atlas

Homologous match to HL_4V9F_030

Geometric discrepancy: 0.2137

The information below is about HL_4V9F_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92304.1

Basepair signature

cWW-cSW-R-R-tSH-R-R

Number of instances in this motif group

5

Unit IDs

3CME|1|0|C|1168
3CME|1|0|U|1169
3CME|1|0|U|1170
3CME|1|0|A|1171
3CME|1|0|G|1172
3CME|1|0|A|1173
3CME|1|0|A|1174
3CME|1|0|G|1175
3CME|1|0|C|1176
3CME|1|0|A|1177
3CME|1|0|G|1178

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain I

50S ribosomal protein L11P