HL_3CME_068

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

3CME|1|0|G|2786, 3CME|1|0|C|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CME_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0544

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

3CME|1|0|C|2780
3CME|1|0|U|2781
3CME|1|0|G|2782
3CME|1|0|A|2783
3CME|1|0|A|2784
3CME|1|0|C|2785
3CME|1|0|G|2786
3CME|1|0|C|2787
3CME|1|0|A|2788
3CME|1|0|U|2789
3CME|1|0|C|2790
3CME|1|0|U|2791
3CME|1|0|A|2792
3CME|1|0|A|2793
3CME|1|0|G|2794

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P