HL_3CXC_012

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGACAACC

Length

9 nucleotides

Bulged bases

3CXC|1|0|G|336, 3CXC|1|0|A|337, 3CXC|1|0|C|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CXC_012 not in the Motif Atlas

Homologous match to HL_4V9F_012

Geometric discrepancy: 0.0588

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

3CXC|1|0|G|334
3CXC|1|0|U|335
3CXC|1|0|G|336
3CXC|1|0|A|337
3CXC|1|0|C|338
3CXC|1|0|A|339
3CXC|1|0|A|340
3CXC|1|0|C|341
3CXC|1|0|C|342

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L4

Chain S

RIBOSOMAL PROTEIN L24