HL_3CXC_016

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCAGAAG

Length

7 nucleotides

Bulged bases

3CXC|1|0|A|497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CXC_016 not in the Motif Atlas

Homologous match to HL_4V9F_016

Geometric discrepancy: 0.0433

The information below is about HL_4V9F_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

3CXC|1|0|U|493
3CXC|1|0|C|494
3CXC|1|0|A|495
3CXC|1|0|G|496
3CXC|1|0|A|497
3CXC|1|0|A|498
3CXC|1|0|G|499

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain Q

RIBOSOMAL PROTEIN L22