HL_3CXC_059

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUCCCAACGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CXC_059 not in the Motif Atlas

Homologous match to HL_4V9F_059

Geometric discrepancy: 0.042

The information below is about HL_4V9F_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

3CXC|1|0|U|2389
3CXC|1|0|U|2390
3CXC|1|0|C|2391
3CXC|1|0|C|2392
3CXC|1|0|C|2393
3CXC|1|0|A|2394
3CXC|1|0|A|2395
3CXC|1|0|C|2396
3CXC|1|0|G|2397
3CXC|1|0|A|2398
3CXC|1|0|G|2399

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L44E

Chain K

RIBOSOMAL PROTEIN L15

Chain P

RIBOSOMAL PROTEIN L21E