HL_3CXC_063

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGCAGAAG

Length

8 nucleotides

Bulged bases

3CXC|1|0|G|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CXC_063 not in the Motif Atlas

Homologous match to HL_4V9F_063

Geometric discrepancy: 0.0475

The information below is about HL_4V9F_063

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3CXC|1|0|U|2563
3CXC|1|0|G|2564
3CXC|1|0|C|2565
3CXC|1|0|A|2566
3CXC|1|0|G|2567
3CXC|1|0|A|2568
3CXC|1|0|A|2569
3CXC|1|0|G|2570

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L6