HL_3CXC_068

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

3CXC|1|0|G|2786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CXC_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0399

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

3CXC|1|0|C|2780
3CXC|1|0|U|2781
3CXC|1|0|G|2782
3CXC|1|0|A|2783
3CXC|1|0|A|2784
3CXC|1|0|C|2785
3CXC|1|0|G|2786
3CXC|1|0|C|2787
3CXC|1|0|A|2788
3CXC|1|0|U|2789
3CXC|1|0|C|2790
3CXC|1|0|U|2791
3CXC|1|0|A|2792
3CXC|1|0|A|2793
3CXC|1|0|G|2794

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L6

Chain I

RIBOSOMAL PROTEIN L13