HL_3D0U_003

3D structure

PDB id

3D0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Lysine Riboswitch Bound to Lysine

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAUAC

Length

7 nucleotides

Bulged bases

3D0U|1|A|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA with one bulged base

Broad Annotation

GNRA

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

3D0U|1|A|G|121
3D0U|1|A|G|122
3D0U|1|A|A|123
3D0U|1|A|A|124
3D0U|1|A|U|125
3D0U|1|A|A|126
3D0U|1|A|C|127

Current chains

Chain A

Lysine Riboswitch RNA

Nearby chains