3D0U Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3D0U_005 | 1/A/35:52 | No text annotation HL_10456.1 | ||
| HL_3D0U_001 | 1/A/38:51 | No text annotation HL_20751.2 | ||
| HL_3D0U_002 | 1/A/90:98 | Pseudoknot geometry HL_93324.4 | ||
| HL_3D0U_003 | 1/A/121:127 | GNRA HL_37824.7 | ||
| HL_3D0U_004 | 1/A/142:147 | GNRA HL_37824.7 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3D0U_001 | 1/A/9:11, 1/A/75:76 | Single bulged C IL_61258.15 | ||
| IL_3D0U_002 | 1/A/16:19, 1/A/67:70 | Double sheared IL_09705.15 | ||
| IL_3D0U_003 | 1/A/19:27, 1/A/60:67 | 9x8 Sarcin-Ricin with GA cWW pair; G-bulge IL_34470.3 | ||
| IL_3D0U_004 | 1/A/35:38, 1/A/51:52 | Major groove platform; stack outside cWW IL_50694.7 | ||
| IL_3D0U_005 | 1/A/81:82, 1/A/106:108 | Single bulged G IL_00225.13 | ||
| IL_3D0U_006 | 1/A/112:114, 1/A/134:136 | Isolated non-canonical cWW pair IL_87907.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_3D0U_001 | 1/A/6:9, 1/A/76:79, 1/A/110:111, 1/A/137:139, 1/A/150:155 | No text annotation J5_94937.1 |
Problematic loops
No problematic loops
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