HL_3D0X_003

3D structure

PDB id

3D0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the unbound lysine riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAAUAC

Length

7 nucleotides

Bulged bases

3D0X|1|A|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3D0X_003 not in the Motif Atlas

Geometric match to HL_3D0U_003

Geometric discrepancy: 0.0631

The information below is about HL_3D0U_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

3D0X|1|A|G|121
3D0X|1|A|G|122
3D0X|1|A|A|123
3D0X|1|A|A|124
3D0X|1|A|U|125
3D0X|1|A|A|126
3D0X|1|A|C|127

Current chains

Chain A

RNA (161-MER)

Nearby chains