HL_3DEG_001

3D structure

PDB id

3DEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

10.9 Å

Loop

Sequence

CAG(H2U)(H2U)GGGAG

Length

10 nucleotides

Bulged bases

3DEG|1|A|G|18, 3DEG|1|A|G|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3DEG_001 not in the Motif Atlas

Homologous match to HL_3WFS_001

Geometric discrepancy: 0.1622

The information below is about HL_3WFS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3DEG|1|A|C|13
3DEG|1|A|A|14
3DEG|1|A|G|15
3DEG|1|A|H2U|16
3DEG|1|A|H2U|17
3DEG|1|A|G|18
3DEG|1|A|G|19
3DEG|1|A|G|20
3DEG|1|A|A|21
3DEG|1|A|G|22

Current chains

Chain A

A/L-tRNA

Nearby chains

Chain C

GTP-binding protein lepA