3DEG Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3DEG_001 | 1/A/13:22 | No text annotation | homologous HL_3WFS_001 NA | |
| HL_3DEG_014 | 1/A/31:39 | tRNA anticodon loop | homologous HL_1FIR_005 HL_06059.3 | |
| HL_3DEG_003 | 1/A/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_28252.4 | |
| HL_3DEG_004 | 1/B/13:22 | tRNA D-loop | homologous HL_5B63_003 HL_20811.2 | |
| HL_3DEG_005 | 1/B/31:39 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.3 | |
| HL_3DEG_006 | 1/B/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5AH5_008 HL_28252.4 | |
| HL_3DEG_007 | 1/E/158:163 | GNRA | geometric HL_4V9F_023 HL_37824.5 | |
| HL_3DEG_008 | 1/F/342:347 | UNCG | geometric HL_5Y85_004 HL_34617.3 | |
| HL_3DEG_009 | 1/G/1064:1074 | No text annotation | homologous HL_6PRV_001 HL_19210.2 | |
| HL_3DEG_010 | 1/G/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.1 | |
| HL_3DEG_011 | 1/I/2658:2663 | GNRA | geometric HL_5J7L_197 HL_37824.5 | |
| HL_3DEG_012 | 1/J/1949:1957 | No text annotation | geometric HL_5J7L_182 HL_20167.1 | |
| HL_3DEG_013 | 1/K/2551:2557 | No text annotation | geometric HL_5TBW_063 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3DEG_002 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3DEG_002 | 1/G/1043:1051, 1/G/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.1 | |
| IL_3DEG_003 | 1/G/1059:1062, 1/G/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_92446.2 | |
| IL_3DEG_004 | 1/G/1087:1090, 1/G/1101:1102 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_3DEG_005 | 1/I/2652:2658, 1/I/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3DEG_001 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3DEG_001 | 1/G/1055:1057, 1/G/1081:1087, 1/G/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_28621.4 | |
| J4_3DEG_001 | 1/A/7:10, 1/A/25:27, 1/A/43:49, 1/A/65:66 | tRNA junction | homologous J4_5AXM_001 NA | |
| J4_3DEG_002 | 1/B/7:10, 1/B/25:27, 1/B/43:49, 1/B/65:66 | tRNA junction | homologous J4_4TUE_004 NA |
Problematic loops
No problematic loops
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