HL_3DEG_007

3D structure

PDB id

3DEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

10.9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3DEG_007 not in the Motif Atlas

Geometric match to HL_4V9F_023

Geometric discrepancy: 0.1294

The information below is about HL_4V9F_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

3DEG|1|E|G|158
3DEG|1|E|G|159
3DEG|1|E|A|160
3DEG|1|E|A|161
3DEG|1|E|A|162
3DEG|1|E|C|163

Current chains

Chain E

30S RNA helix 8

Nearby chains

Chain F

30S RNA helix 14