HL_3DIM_003

3D structure

PDB id

3DIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Cs+ Soak

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAAUAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3DIM_003 not in the Motif Atlas

Geometric match to HL_3DIL_003

Geometric discrepancy: 0.0488

The information below is about HL_3DIL_003

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

3DIM|1|A|G|124
3DIM|1|A|G|125
3DIM|1|A|A|126
3DIM|1|A|A|127
3DIM|1|A|U|128
3DIM|1|A|A|129
3DIM|1|A|C|130

Current chains

Chain A

RNA (174-MER)

Nearby chains