HL_3DJ2_005

3D structure

PDB id

3DJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Tl+ Soak

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAUCAGGGGAGGAAUCGG

Length

18 nucleotides

Bulged bases

3DJ2|1|A|C|53

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3DJ2_005 not in the Motif Atlas

Geometric match to HL_3DIL_005

Geometric discrepancy: 0.0453

The information below is about HL_3DIL_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10456.1

Basepair signature

cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3DJ2|1|A|C|38
3DJ2|1|A|A|39
3DJ2|1|A|U|40
3DJ2|1|A|C|41
3DJ2|1|A|A|42
3DJ2|1|A|G|43
3DJ2|1|A|G|44
3DJ2|1|A|G|45
3DJ2|1|A|G|46
3DJ2|1|A|A|47
3DJ2|1|A|G|48
3DJ2|1|A|G|49
3DJ2|1|A|A|50
3DJ2|1|A|A|51
3DJ2|1|A|U|52
3DJ2|1|A|C|53
3DJ2|1|A|G|54
3DJ2|1|A|G|55

Current chains

Chain A

RNA (174-MER)

Nearby chains