Motif HL_10456.1 Version HL_10456.1 of this group appears in releases 3.88 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-4 | 3-15 | 4-16 | 5-13 | 6-10 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3DIL_005 | 3DIL | 0.0000 | 1 | A | RNA (174-MER) | C | 38 | A | 39 | U | 40 | C | 41 | A | 42 | G | 43 | G | 44 | G | 45 | G | 46 | A | 47 | G | 48 | G | 49 | A | 50 | A | 51 | U | 52 | G | 54 | G | 55 | cWW | tWWa | cWW | tHW | ncHH | |
| 2 | HL_3D0U_005 | 3D0U | 0.1414 | 1 | A | Lysine Riboswitch RNA | C | 35 | A | 36 | U | 37 | C | 38 | A | 39 | G | 40 | G | 41 | G | 42 | G | 43 | A | 44 | G | 45 | G | 46 | A | 47 | A | 48 | U | 49 | G | 51 | G | 52 | cWW | cSH | tWWa | cWW | tHW | ncHH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUCAGGGGAGGAAUCGG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUCAGGGGAGGAAUCG | 2 |
Release history
| Release | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.14 | Avg 0.07 | Max 0.14
Coloring options: