HL_3DW5_001

3D structure

PDB id

3DW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modified

Experimental method

X-RAY DIFFRACTION

Resolution

0.96 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3DW5_001 not in the Motif Atlas

Geometric match to HL_4NLF_001

Geometric discrepancy: 0.0556

The information below is about HL_4NLF_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

3DW5|1|A|C|2658
3DW5|1|A|G|2659
3DW5|1|A|A|2660
3DW5|1|A|G|2661
3DW5|1|A|A|2662
3DW5|1|A|G|2663

Current chains

Chain A

Sarcin/Ricin Domain from E. Coli 23 S rRNA

Nearby chains