HL_3EOG_004

3D structure

PDB id

3EOG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystallization showing exon recognition by a group II intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UGCAUAACAA

Length

10 nucleotides

Bulged bases

3EOG|1|A|G|179, 3EOG|1|A|C|180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3EOG_004 not in the Motif Atlas

Geometric match to HL_3IGI_005

Geometric discrepancy: 0.0823

The information below is about HL_3IGI_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

3EOG|1|A|U|178
3EOG|1|A|G|179
3EOG|1|A|C|180
3EOG|1|A|A|181
3EOG|1|A|U|182
3EOG|1|A|A|183
3EOG|1|A|A|184
3EOG|1|A|C|185
3EOG|1|A|A|186
3EOG|1|A|A|187

Current chains

Chain A

Group IIC intron

Nearby chains

Chain B

5'-R(*UP*UP*AP*UP*UP*A)-3'