3EOG Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3EOG_001 | 1/A/30:38 | T-loop with 2 stacked bulged bases | geometric HL_3IGI_001 HL_33597.3 | |
| HL_3EOG_002 | 1/A/47:61 | Pseudoknot geometry with G-bulge | geometric HL_3IGI_002 HL_94488.1 | |
| HL_3EOG_003 | 1/A/89:94 | GNRA | geometric HL_4V9F_065 HL_34789.4 | |
| HL_3EOG_004 | 1/A/178:187 | Pseudoknot geometry | geometric HL_3IGI_005 HL_52651.2 | |
| HL_3EOG_005 | 1/A/274:279 | GNRA | geometric HL_4K27_001 HL_34789.4 | |
| HL_3EOG_009 | 1/A/307:312 | UNCG | geometric HL_6CK5_001 HL_61337.3 | |
| HL_3EOG_007 | 1/A/338:343 | UNCG | geometric HL_5J7L_005 NA | |
| HL_3EOG_008 | 1/A/368:373 | Other HL | geometric HL_3IGI_009 HL_64036.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3EOG_006 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3EOG_001 | 1/A/10:14, 1/A/257:262 | No text annotation | geometric IL_3IGI_001 IL_99498.1 | |
| IL_3EOG_002 | 1/A/70:74, 1/A/113:117 | Triple sheared | geometric IL_3IGI_002 IL_15190.2 | |
| IL_3EOG_003 | 1/A/76:79, 1/A/103:111 | No text annotation | geometric IL_3IGI_003 IL_89312.1 | |
| IL_3EOG_014 | 1/A/82:84, 1/A/99:100 | No text annotation | ||
| IL_3EOG_004 | 1/A/128:129, 1/A/234:238 | Multiple bulged bases | geometric IL_3IGI_005 IL_26685.1 | |
| IL_3EOG_015 | 1/A/158:164, 1/A/213:219 | No text annotation | ||
| IL_3EOG_009 | 1/A/172:175, 1/A/190:194 | UAA/GAN related | geometric IL_3IGI_009 IL_77691.7 | |
| IL_3EOG_010 | 1/A/267:271, 1/A/282:286 | No text annotation | geometric IL_3IGI_010 IL_96788.1 | |
| IL_3EOG_011 | 1/A/295:303, 1/A/315:322 | No text annotation | ||
| IL_3EOG_016 | 1/A/304:306, 1/A/313:314 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_3EOG_012 | 1/A/332:335, 1/A/346:350 | Receptor of 11-nt loop-receptor motif | geometric IL_3IGI_012 IL_95104.1 | |
| IL_3EOG_013 | 1/A/365:366, 1/A/375:378 | Multiple bulged bases | geometric IL_3IGI_013 IL_44609.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3EOG_005 | No text annotation | ||
| IL_3EOG_006 | Kink-turn | ||
| IL_3EOG_007 | No text annotation | ||
| IL_3EOG_008 | Pseudoknot |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_3EOG_001 | 1/A/24:28, 1/A/40:43, 1/A/65:68, 1/A/119:123, 1/A/243:247 | No text annotation |
Problematic loops
No problematic loops
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