HL_3EOG_007

3D structure

PDB id

3EOG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystallization showing exon recognition by a group II intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GUUCGC

Length

6 nucleotides

Bulged bases

3EOG|1|A|U|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3EOG_007 not in the Motif Atlas

Geometric match to HL_5J7L_005

Geometric discrepancy: 0.2368

The information below is about HL_5J7L_005

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

3EOG|1|A|G|338
3EOG|1|A|U|339
3EOG|1|A|U|340
3EOG|1|A|C|341
3EOG|1|A|G|342
3EOG|1|A|C|343

Current chains

Chain A

Group IIC intron

Nearby chains