3D structure

PDB id
3G6E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GUUGGAUAUC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3G6E_013 not in the Motif Atlas
Homologous match to HL_4V9F_013
Geometric discrepancy: 0.0279
The information below is about HL_4V9F_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_87463.1
Basepair signature
cWW-cWW-F-F-F-F-F
Number of instances in this motif group
1

Unit IDs

3G6E|1|0|G|390
3G6E|1|0|U|391
3G6E|1|0|U|392
3G6E|1|0|G|393
3G6E|1|0|G|394
3G6E|1|0|A|395
3G6E|1|0|U|396
3G6E|1|0|A|397
3G6E|1|0|U|398
3G6E|1|0|C|399

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L44E
Chain L
50S ribosomal protein L15P
Chain M
50S ribosomal protein L15e

Coloring options:


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