HL_3G6E_068

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

3G6E|1|0|G|2786, 3G6E|1|0|C|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3G6E_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0356

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3G6E|1|0|C|2780
3G6E|1|0|U|2781
3G6E|1|0|G|2782
3G6E|1|0|A|2783
3G6E|1|0|A|2784
3G6E|1|0|C|2785
3G6E|1|0|G|2786
3G6E|1|0|C|2787
3G6E|1|0|A|2788
3G6E|1|0|U|2789
3G6E|1|0|C|2790
3G6E|1|0|U|2791
3G6E|1|0|A|2792
3G6E|1|0|A|2793
3G6E|1|0|G|2794

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P