HL_3GX6_001

3D structure

PDB id

3GX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GACUGGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3GX6_001 not in the Motif Atlas

Geometric match to HL_4AOB_001

Geometric discrepancy: 0.0874

The information below is about HL_4AOB_001

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3GX6|1|A|G|23
3GX6|1|A|A|24
3GX6|1|A|C|25
3GX6|1|A|U|26
3GX6|1|A|G|27
3GX6|1|A|G|28
3GX6|1|A|C|29

Current chains

Chain A

RNA (94-MER)

Nearby chains