HL_3GX6_002

3D structure

PDB id

3GX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3GX6_002 not in the Motif Atlas

Geometric match to HL_5J7L_152

Geometric discrepancy: 0.1056

The information below is about HL_5J7L_152

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

3GX6|1|A|A|49
3GX6|1|A|G|50
3GX6|1|A|A|51
3GX6|1|A|A|52
3GX6|1|A|A|53
3GX6|1|A|U|54

Current chains

Chain A

RNA (94-MER)

Nearby chains