HL_3HHN_008

3D structure

PDB id

3HHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of class I ligase ribozyme self-ligation product, in complex with U1A RBD

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98984.5

Basepair signature

cWW-F

Number of instances in this motif group

31

Unit IDs

3HHN|1|E|C|1004
3HHN|1|E|A|1005
3HHN|1|E|U|1006
3HHN|1|E|U|1007
3HHN|1|E|G|1008
3HHN|1|E|C|1009
3HHN|1|E|A|1010
3HHN|1|E|C|1011
3HHN|1|E|U|1012
3HHN|1|E|C|1013
3HHN|1|E|C|1014
3HHN|1|E|G|1015

Current chains

Chain E

Class I ligase ribozyme, self-ligation product

Nearby chains

Chain C

Class I ligase ribozyme, self-ligation product

Chain D

U1 small nuclear ribonucleoprotein A