3HHN Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3HHN_001 | 1/C/1:12 | No text annotation | geometric HL_3HHN_006 HL_38649.1 | |
| HL_3HHN_002 | 1/C/40:44 | No text annotation | geometric HL_3IVK_002 HL_80709.3 | |
| HL_3HHN_004 | 1/C/75:82 | Pseudoknot geometry | geometric HL_3IVK_004 HL_30680.3 | |
| HL_3HHN_005 | 1/C/92:99 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_81538.2 | |
| HL_3HHN_003 | 1/C/1004:1015 | U1 small nuclear ribonucleoprotein A binding hairpin | geometric HL_5DDP_002 HL_33074.4 | |
| HL_3HHN_006 | 1/E/1:12 | No text annotation HL_38649.1 | ||
| HL_3HHN_007 | 1/E/40:44 | No text annotation HL_80709.3 | ||
| HL_3HHN_009 | 1/E/75:82 | Pseudoknot geometry HL_30680.3 | ||
| HL_3HHN_010 | 1/E/92:99 | GNRA wlth tandem sheared HL_81538.2 | ||
| HL_3HHN_008 | 1/E/1004:1015 | U1 small nuclear ribonucleoprotein A binding hairpin HL_33074.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3HHN_001 | 1/C/46:48, 1/C/112:113 | Single bulged C | geometric IL_3HHN_003 IL_61258.15 | |
| IL_3HHN_002 | 1/C/87:89, 1/C/102:104 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_87907.2 | |
| IL_3HHN_003 | 1/E/46:48, 1/E/112:113 | Single bulged C IL_61258.15 | ||
| IL_3HHN_004 | 1/E/87:89, 1/E/102:104 | Isolated non-canonical cWW pair IL_87907.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_3HHN_001 | 1/C/54:55, 1/C/69:72, 1/C/85:86, 1/C/105:106 | No text annotation | ||
| J4_3HHN_002 | 1/E/54:55, 1/E/69:72, 1/E/85:86, 1/E/105:106 | class I ligase product J4_63076.1 |
Problematic loops
No problematic loops
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