HL_3I55_059

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

UUCCCAACGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3I55_059 not in the Motif Atlas

Homologous match to HL_4V9F_059

Geometric discrepancy: 0.0429

The information below is about HL_4V9F_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

3I55|1|0|U|2389
3I55|1|0|U|2390
3I55|1|0|C|2391
3I55|1|0|C|2392
3I55|1|0|C|2393
3I55|1|0|A|2394
3I55|1|0|A|2395
3I55|1|0|C|2396
3I55|1|0|G|2397
3I55|1|0|A|2398
3I55|1|0|G|2399

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain L

50S ribosomal protein L15P

Chain Q

50S ribosomal protein L21e