HL_3I55_076

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GUGACAACC

Length

9 nucleotides

Bulged bases

3I55|1|0|G|336, 3I55|1|0|A|337, 3I55|1|0|C|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3I55_076 not in the Motif Atlas

Homologous match to HL_4V9F_012

Geometric discrepancy: 0.0861

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

3I55|1|0|G|334
3I55|1|0|U|335
3I55|1|0|G|336
3I55|1|0|A|337
3I55|1|0|C|338
3I55|1|0|A|339
3I55|1|0|A|340
3I55|1|0|C|341
3I55|1|0|C|342

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P