HL_3I56_010

3D structure

PDB id

3I56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Triacetyloleandomcyin Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUGGAAUA

Length

8 nucleotides

Bulged bases

3I56|1|0|U|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3I56_010 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.0593

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

3I56|1|0|U|312
3I56|1|0|U|313
3I56|1|0|G|314
3I56|1|0|G|315
3I56|1|0|A|316
3I56|1|0|A|317
3I56|1|0|U|318
3I56|1|0|A|319

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P

Chain Y

50S ribosomal protein L32e