HL_3ICQ_005

3D structure

PDB id

3ICQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Karyopherin nuclear state

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_41998.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

61

Unit IDs

3ICQ|1|E|G|53
3ICQ|1|E|U|54
3ICQ|1|E|U|55
3ICQ|1|E|C|56
3ICQ|1|E|G|57
3ICQ|1|E|A|58
3ICQ|1|E|U|59
3ICQ|1|E|C|60
3ICQ|1|E|C|61

Current chains

Chain E

RNA (62-MER)

Nearby chains

Chain C

GTP-binding nuclear protein GSP1/CNR1

Chain U

Exportin-T