3ICQ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3ICQ_002 | 1/D/53:61 | T-loop with 2 stacked bulged bases | geometric HL_6CU1_001 HL_28252.9 | |
| HL_3ICQ_005 | 1/E/53:61 | T-loop with 2 stacked bulged bases HL_28252.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3ICQ_001 | tRNA D-loop | ||
| HL_3ICQ_003 | tRNA D-loop | ||
| HL_3ICQ_004 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3ICQ_001 | No text annotation | ||
| IL_3ICQ_002 | Isolated non-canonical cWW pair | ||
| IL_3ICQ_003 | Isolated cWH basepair | ||
| IL_3ICQ_004 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_3ICQ_001 | 1/E/7:11, 1/E/24:27, 1/E/43:49, 1/E/65:66 | tRNA junction J4_80682.1 |
Problematic loops
No problematic loops
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