HL_3IIN_003

3D structure

PDB id

3IIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Plasticity of the kink turn structural motif

Experimental method

X-RAY DIFFRACTION

Resolution

4.18 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

3IIN|1|B|C|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3IIN_003 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1604

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3IIN|1|B|C|1002
3IIN|1|B|A|1003
3IIN|1|B|U|1004
3IIN|1|B|U|1005
3IIN|1|B|G|1006
3IIN|1|B|C|1007
3IIN|1|B|A|1008
3IIN|1|B|C|1009
3IIN|1|B|U|1010
3IIN|1|B|C|1011
3IIN|1|B|C|1012
3IIN|1|B|G|1013

Current chains

Chain B

Group I intron

Nearby chains

Chain A

U1 small nuclear ribonucleoprotein A