HL_3IVK_004

3D structure

PDB id

3IVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Catalytic Core of an RNA Polymerase Ribozyme Complexed with an Antigen Binding Antibody Fragment

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGGCAGC

Length

8 nucleotides

Bulged bases

3IVK|1|M|U|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3IVK|1|M|G|75
3IVK|1|M|U|76
3IVK|1|M|G|77
3IVK|1|M|G|78
3IVK|1|M|C|79
3IVK|1|M|A|80
3IVK|1|M|G|81
3IVK|1|M|C|82

Current chains

Chain M

class I ligase product

Nearby chains