HL_3IWN_003

3D structure

PDB id

3IWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of a bacterial c-di-GMP riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3IWN_003 not in the Motif Atlas

Geometric match to HL_3IWN_001

Geometric discrepancy: 0.1685

The information below is about HL_3IWN_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

3IWN|1|B|C|121
3IWN|1|B|G|122
3IWN|1|B|A|123
3IWN|1|B|A|124
3IWN|1|B|A|125
3IWN|1|B|G|126

Current chains

Chain B

C-di-GMP riboswitch

Nearby chains

Chain D

U1 small nuclear ribonucleoprotein A