3IWN Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3IWN_001 | 1/A/21:26 | GNRA HL_37824.7 | ||
| HL_3IWN_002 | 1/A/57:68 | No text annotation HL_15118.1 | ||
| HL_3IWN_003 | 1/B/121:126 | GNRA | geometric HL_3IWN_001 HL_37824.7 | |
| HL_3IWN_004 | 1/B/157:168 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3IWN_001 | 1/A/2:3, 1/A/89:91 | Minor groove platform IL_51454.2 | ||
| IL_3IWN_002 | 1/A/12:16, 1/A/31:35 | Triple sheared IL_50730.2 | ||
| IL_3IWN_003 | 1/A/42:44, 1/A/81:82 | Major groove intercalation IL_89505.4 | ||
| IL_3IWN_004 | 1/A/46:47, 1/A/76:79 | Multiple bulged bases IL_82107.4 | ||
| IL_3IWN_005 | 1/A/51:54, 1/A/71:72 | Minor groove platform IL_15052.4 | ||
| IL_3IWN_006 | 1/B/112:116, 1/B/131:135 | Triple sheared | geometric IL_3IGI_002 IL_50730.2 | |
| IL_3IWN_007 | 1/B/142:144, 1/B/181:182 | Multiple bulged bases | geometric IL_4V9F_021 IL_82107.4 | |
| IL_3IWN_010 | 1/B/146:147, 1/B/176:179 | Major groove intercalation | geometric IL_1NBS_009 IL_82107.4 | |
| IL_3IWN_012 | 1/B/151:154, 1/B/171:172 | Minor groove platform | geometric IL_3IWN_005 IL_15052.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3IWN_008 | Tandem non-canonical cWW pairs | ||
| IL_3IWN_009 | No text annotation | ||
| IL_3IWN_011 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3IWN_003 | 1/A/4:11, 1/A/36:40, 1/A/84:88 | No text annotation J3_96372.2 | ||
| J3_3IWN_002 | 1/B/104:111, 1/B/136:140, 1/B/184:188 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3IWN_001 | No text annotation |
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