HL_3IYR_005

3D structure

PDB id

3IYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

tmRNA-SmpB: a journey to the center of the bacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GCCCGUCCGCGGGC

Length

14 nucleotides

Bulged bases

3IYR|1|A|C|246

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3IYR_005 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3941

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3IYR|1|A|G|243
3IYR|1|A|C|244
3IYR|1|A|C|245
3IYR|1|A|C|246
3IYR|1|A|G|247
3IYR|1|A|U|248
3IYR|1|A|C|249
3IYR|1|A|C|250
3IYR|1|A|G|251
3IYR|1|A|C|252
3IYR|1|A|G|253
3IYR|1|A|G|254
3IYR|1|A|G|255
3IYR|1|A|C|256

Current chains

Chain A

tmRNA

Nearby chains