HL_3IZ4_004

3D structure

PDB id

3IZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CCUGCCUGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3IZ4_004 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3513

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

3IZ4|1|A|C|225
3IZ4|1|A|C|226
3IZ4|1|A|U|227
3IZ4|1|A|G|228
3IZ4|1|A|C|229
3IZ4|1|A|C|230
3IZ4|1|A|U|231
3IZ4|1|A|G|232
3IZ4|1|A|G|233
3IZ4|1|A|G|234

Current chains

Chain A

Modified E. coli transfer-messenger RNA

Nearby chains