HL_3J0L_011
3D structure
- PDB id
- 3J0L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 3J0L|1|4|U|2617, 3J0L|1|4|G|2618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0L_011 not in the Motif Atlas
- Geometric match to HL_5TBW_054
- Geometric discrepancy: 0.3025
- The information below is about HL_5TBW_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
3J0L|1|4|C|2616
3J0L|1|4|U|2617
3J0L|1|4|G|2618
3J0L|1|4|G|2619
3J0L|1|4|G|2620
3J0L|1|4|G|2621
3J0L|1|4|C|2622
3J0L|1|4|G|2623
3J0L|1|4|G|2624
Current chains
- Chain 4
- 60S ribosomal RNA fragment
Nearby chains
- Chain 7
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- Ribosomal protein L10
- Chain V
- Transfer RNA; tRNA
Coloring options: