3J0L Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J0L_007 | No text annotation | ||
| HL_3J0L_008 | GNRA | ||
| HL_3J0L_009 | No text annotation | ||
| HL_3J0L_010 | No text annotation | ||
| HL_3J0L_011 | No text annotation | ||
| HL_3J0L_012 | Pseudoknot geometry | ||
| HL_3J0L_013 | No text annotation | ||
| HL_3J0L_014 | GNRA | ||
| HL_3J0L_018 | tRNA D-loop | ||
| HL_3J0L_019 | tRNA anticodon loop | ||
| HL_3J0L_020 | T-loop with 2 stacked bulged bases | ||
| HL_3J0L_024 | No text annotation | ||
| HL_3J0L_021 | tRNA D-loop | ||
| HL_3J0L_025 | No text annotation | ||
| HL_3J0L_022 | No text annotation | ||
| HL_3J0L_026 | No text annotation | ||
| HL_3J0L_023 | T-loop with 2 stacked bulged bases | ||
| HL_3J0L_015 | No text annotation | ||
| HL_3J0L_016 | tRNA anticodon loop | ||
| HL_3J0L_027 | No text annotation | ||
| HL_3J0L_017 | T-loop with 2 stacked bulged bases | ||
| HL_3J0L_001 | GNRA variation | ||
| HL_3J0L_002 | No text annotation | ||
| HL_3J0L_003 | No text annotation | ||
| HL_3J0L_005 | No text annotation | ||
| HL_3J0L_006 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J0L_017 | Tandem non-canonical cWW pairs | ||
| IL_3J0L_018 | Tandem non-canonical cWW pairs | ||
| IL_3J0L_019 | Single bulged U | ||
| IL_3J0L_020 | Single stack bend | ||
| IL_3J0L_021 | No text annotation | ||
| IL_3J0L_022 | Isolated non-canonical cWW pair | ||
| IL_3J0L_023 | Major groove intercalation | ||
| IL_3J0L_024 | Multiple bulged bases | ||
| IL_3J0L_025 | No text annotation | ||
| IL_3J0L_026 | No text annotation | ||
| IL_3J0L_027 | No text annotation | ||
| IL_3J0L_028 | Single stack bend | ||
| IL_3J0L_029 | Single bulged A | ||
| IL_3J0L_030 | Isolated non-canonical cWW pair | ||
| IL_3J0L_031 | Major groove platform | ||
| IL_3J0L_038 | No text annotation | ||
| IL_3J0L_032 | Major groove minor groove platform with extra cWW | ||
| IL_3J0L_033 | Tandem non-canonical cWW pairs | ||
| IL_3J0L_034 | Triple sheared | ||
| IL_3J0L_035 | Single bulged A | ||
| IL_3J0L_039 | Minor groove platform | ||
| IL_3J0L_040 | Isolated non-canonical cWW pair | ||
| IL_3J0L_037 | Isolated non-canonical cWW pair | ||
| IL_3J0L_036 | Isolated non-canonical cWW pair | ||
| IL_3J0L_001 | SSU/LSU pseudoknot | ||
| IL_3J0L_002 | Single bulged U | ||
| IL_3J0L_003 | Single bulged A | ||
| IL_3J0L_004 | Kink-turn related | ||
| IL_3J0L_008 | Isolated non-canonical cWW pair | ||
| IL_3J0L_009 | Isolated non-canonical cWW pair | ||
| IL_3J0L_010 | No text annotation | ||
| IL_3J0L_011 | Tandem non-canonical cWW pairs | ||
| IL_3J0L_012 | Double sheared | ||
| IL_3J0L_013 | Isolated non-canonical cWW pair | ||
| IL_3J0L_014 | Tandem non-canonical cWW pairs | ||
| IL_3J0L_015 | Triple sheared | ||
| IL_3J0L_016 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J0L_002 | No text annotation | ||
| J3_3J0L_001 | No text annotation | ||
| J4_3J0L_001 | tRNA junction | ||
| J4_3J0L_004 | No text annotation | ||
| J4_3J0L_002 | No text annotation | ||
| J4_3J0L_005 | No text annotation | ||
| J4_3J0L_003 | No text annotation |
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