HL_3J0L_012

3D structure

PDB id

3J0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J0L_012 not in the Motif Atlas

Geometric match to HL_5TBW_057

Geometric discrepancy: 0.1531

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

3J0L|1|6|C|2693
3J0L|1|6|A|2694
3J0L|1|6|A|2695
3J0L|1|6|A|2696
3J0L|1|6|A|2697
3J0L|1|6|G|2698
3J0L|1|6|G|2699
3J0L|1|6|G|2700

Current chains

Chain 6

60S ribosomal RNA fragment

Nearby chains

Chain 1

60S ribosomal RNA fragment

Chain 5

60S ribosomal RNA fragment

Chain V

Transfer RNA; tRNA