HL_3J0L_017

3D structure

PDB id

3J0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

3J0L|1|Y|C|56, 3J0L|1|Y|G|57

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J0L_017 not in the Motif Atlas

Homologous match to HL_3TUP_003

Geometric discrepancy: 0.3007

The information below is about HL_3TUP_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

3J0L|1|Y|G|53
3J0L|1|Y|U|54
3J0L|1|Y|U|55
3J0L|1|Y|C|56
3J0L|1|Y|G|57
3J0L|1|Y|A|58
3J0L|1|Y|U|59
3J0L|1|Y|U|60
3J0L|1|Y|C|61

Current chains

Chain Y

tRNA

Nearby chains

Chain 1

60S ribosomal RNA fragment

Chain 7

Large subunit ribosomal RNA; LSU rRNA

Chain J

Ribosomal protein L10