HL_3J0L_021
3D structure
- PDB id
- 3J0L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 3J0L|1|W|C|17, 3J0L|1|W|G|18, 3J0L|1|W|U|20
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0L_021 not in the Motif Atlas
- Homologous match to HL_6JXM_001
- Geometric discrepancy: 0.1893
- The information below is about HL_6JXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
3J0L|1|W|C|13
3J0L|1|W|A|14
3J0L|1|W|G|15
3J0L|1|W|U|16
3J0L|1|W|C|17
3J0L|1|W|G|18
3J0L|1|W|G|19
3J0L|1|W|U|20
3J0L|1|W|A|21
3J0L|1|W|G|22
Current chains
- Chain W
- tRNA
Nearby chains
- Chain 3
- 60S ribosomal RNA fragment
Coloring options: