3D structure

PDB id
3J0L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
Experimental method
ELECTRON MICROSCOPY
Resolution
9.8 Å

Loop

Sequence
UCAGUCGGUAGA
Length
12 nucleotides
Bulged bases
3J0L|1|W|U|16, 3J0L|1|W|C|17, 3J0L|1|W|G|18, 3J0L|1|W|G|19, 3J0L|1|W|U|20, 3J0L|1|W|A|21
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3J0L_024 not in the Motif Atlas
Homologous match to HL_5IB8_207
Geometric discrepancy: 0.2844
The information below is about HL_5IB8_207
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J0L|1|W|U|12
3J0L|1|W|C|13
3J0L|1|W|A|14
3J0L|1|W|G|15
3J0L|1|W|U|16
3J0L|1|W|C|17
3J0L|1|W|G|18
3J0L|1|W|G|19
3J0L|1|W|U|20
3J0L|1|W|A|21
3J0L|1|W|G|22
3J0L|1|W|A|23

Current chains

Chain W
tRNA

Nearby chains

Chain 3
60S ribosomal RNA fragment

Coloring options:


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