HL_3J0L_024
3D structure
- PDB id
- 3J0L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- UCAGUCGGUAGA
- Length
- 12 nucleotides
- Bulged bases
- 3J0L|1|W|U|16, 3J0L|1|W|C|17, 3J0L|1|W|G|18, 3J0L|1|W|G|19, 3J0L|1|W|U|20, 3J0L|1|W|A|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0L_024 not in the Motif Atlas
- Homologous match to HL_5IB8_207
- Geometric discrepancy: 0.2844
- The information below is about HL_5IB8_207
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J0L|1|W|U|12
3J0L|1|W|C|13
3J0L|1|W|A|14
3J0L|1|W|G|15
3J0L|1|W|U|16
3J0L|1|W|C|17
3J0L|1|W|G|18
3J0L|1|W|G|19
3J0L|1|W|U|20
3J0L|1|W|A|21
3J0L|1|W|G|22
3J0L|1|W|A|23
Current chains
- Chain W
- tRNA
Nearby chains
- Chain 3
- 60S ribosomal RNA fragment
Coloring options: